NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0179592_10136089

Scaffold Ga0179592_10136089


Overview

Basic Information
Taxon OID3300020199 Open in IMG/M
Scaffold IDGa0179592_10136089 Open in IMG/M
Source Dataset NameVadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1127
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000512Metagenome / Metatranscriptome1064Y
F000739Metagenome / Metatranscriptome913Y
F018046Metagenome / Metatranscriptome237N

Sequences

Protein IDFamilyRBSSequence
Ga0179592_101360891F018046GAGGMPVVGSSAYNTAGQITSLVRSLLNDAQGNLFTDTVLL
Ga0179592_101360892F000739GGAGMRANRVEVWLKGMLAAGVSGAAGGVMTGLAAVGIDPGHFNLQAGIGATMRIGAAAALINAVIGVAAYLQKSPLPGE
Ga0179592_101360893F000512N/AVVWGWNRLGWIGGKFEDRDAGGDLIREVVELRWEPKYPQVNRWHVERWVPAEAYGSPRAWYAQTMERADGKSVAALGPYPERGEYEHCFTLQGPRGEFVQLTPTIAEHVARAIEWARGRDNAKQRAKLYEREAREERAYEEWAFEVMDDGAPAFGGVPMVAVG
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