Scaffold Ga0179592_10262818

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0179592_10262818

Scaffold Ga0179592_10262818

Overview

Basic Information
Taxon OID	3300020199 Open in IMG/M
Scaffold ID	Ga0179592_10262818 Open in IMG/M
Source Dataset Name	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	772
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005426	Metagenome / Metatranscriptome	401	Y
F054293	Metagenome	140	Y
F085194	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0179592_102628181	F085194	N/A	GVERERKLEGKPPLVQFLPRSKRAKKTPKKTEGAHSTRKINGPPPPASDVESTVRKNAHA
Ga0179592_102628182	F054293	GGA	MPKKKKTKAVTVDGIPIKPISPAEHRRLDRRIKKKYEKLRRRYPEVHGKKVDWISH
Ga0179592_102628183	F005426	AGGA	VTEERKFTILFAATILAARKLIDMDPNKPNMAKGFFVDRAIDDAVFILERIDVRWPSIVNIFAAKG

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.