Scaffold Ga0163148_10087349

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0163148_10087349

Scaffold Ga0163148_10087349

Overview

Basic Information
Taxon OID	3300020203 Open in IMG/M
Scaffold ID	Ga0163148_10087349 Open in IMG/M
Source Dataset Name	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica- Oligotrophic Lake LV.19.MP7.P2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2045
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Naviculaceae → Fistulifera → Fistulifera solaris	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat → Freshwater Microbial Mat Bacterial Communities From Lake Vanda, Mcmurdo Dry Valleys, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Lake Vanda, McMurdo Dry Valleys
Coordinates	Lat. (^o)	-77.5281	Long. (^o)	161.59	Alt. (m)		Depth (m)	19
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F021217	Metagenome / Metatranscriptome	219	Y
F079410	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0163148_100873491	F079410	AGAAGG	LLRTFGCLLWVKILAWQNRAKYIQDTKKGIFLGCRTNTLKNVVWYDPLTDRVKHSYHVRFDEGFNDLPLAQLPPNVALMDRRKERVPEETLTIAIPPFTTSEHPFFHEDDGTVKVVCESDMCGFELSEDDCMKRVCVSGFKKEGRGTKGRRSCNTMCSSER
Ga0163148_100873493	F021217	GAG	LTCADGKTPIVPEGHGTARIPANNAEGCVPIKWCYTPDIPNFTLSPNLFKPLLGKLYNGYALECNDDKKTFQFTVNHKKRKSGSLLLLGTTRGGLCYTRSAVPPMPTTEGATEMSLGAADKAAISMVEDHPKNLHQHELKLHALSVKAERLLWHQRLAHCGDEQLCRAHMFSDGVPEMRLGKDSALDSCPV

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