NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194116_10001134

Scaffold Ga0194116_10001134


Overview

Basic Information
Taxon OID3300020204 Open in IMG/M
Scaffold IDGa0194116_10001134 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015008 Mahale S9 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39954
Total Scaffold Genes65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (13.85%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.4662Long. (o)29.9408Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010163Metagenome / Metatranscriptome307Y
F064770Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0194116_1000113439F064770N/AMDFNLKTYKCFKIKHYLKVINFFFFFQGTSVDNENXIKIEQGFANHELRYYRILNKLMINTLKSSIFKNLVVLIHGPIILLSSDTNNAKLTFKELESINPLINLLGFRLNNKIYSKKQIKNLKKMSYLENIYIFHKSMKTLTKLPYYKLKSKKILPMSK
Ga0194116_1000113442F010163N/AMLLLKIAKNSFFSRNTITHGYIKHTSQTIKALDFIKEETFSYYVQXLLLFWYTNLSNLRIKTNHFIVYIYSSFLNNQKLLSYVININLSLTNTIINVNSVNGNPKFFYSAGMFNLQKKQKTRQPKAIITILRTLLLKSKFFKTKPVAVHFNNLFFKYQSYIFKKLKQKIFAKLITSYLYKAHNGCRLKKKKRIKIRTRTRKL
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