NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194116_10018018

Scaffold Ga0194116_10018018


Overview

Basic Information
Taxon OID3300020204 Open in IMG/M
Scaffold IDGa0194116_10018018 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015008 Mahale S9 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6131
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.4662Long. (o)29.9408Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021761Metagenome / Metatranscriptome217Y
F022116Metagenome / Metatranscriptome216Y

Sequences

Protein IDFamilyRBSSequence
Ga0194116_100180181F021761N/AITVLVVMFAIYAAGYAGGRDQAVQAYNNHPACNTNLKP
Ga0194116_100180185F022116AGGAGGMTEPFLTTNELAARWGLKPAAIKNQRARGIGPSYYTIPRRYCPAGTPRVRYPLAQVLAFEEANGITPLDP

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