NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194116_10023696

Scaffold Ga0194116_10023696


Overview

Basic Information
Taxon OID3300020204 Open in IMG/M
Scaffold IDGa0194116_10023696 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015008 Mahale S9 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5044
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (84.21%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.4662Long. (o)29.9408Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045622Metagenome / Metatranscriptome152Y
F053899Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0194116_1002369618F053899AGGAGMTRRAEFDAVMKRIRNLEEYEIQIDVPEEFQFDGPVPFDMEIAGGVAWVKVIAASMEEAKYKVNEYFESKYK
Ga0194116_100236965F045622AGGVKQLLEILPKLLSVMPELVKYIKYLPILMILAGIGYGIYYGMQNYKDPYLCYDNQLYEQKFISSNVYVFIGDVCVSGNENENKPAATEN

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