NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194116_10263065

Scaffold Ga0194116_10263065


Overview

Basic Information
Taxon OID3300020204 Open in IMG/M
Scaffold IDGa0194116_10263065 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015008 Mahale S9 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)933
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.4662Long. (o)29.9408Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003332Metagenome493Y
F037122Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0194116_102630651F037122N/AAQVGALTTFGVAERIAARQASNVTINVTGGLSTSAEIGQNVLNSLLAYQRSNGPLDLQIA
Ga0194116_102630652F003332GGAMPGTAVINSGNYTLEIDTGFQYNAFTLDSATKGLLNGTTFVLDGTQQFADVTDGVNVINVRRGRRDVGDQFSAGTMTFTMLDTTGVFNPFDTDSPYYDPSNDEPGLAPMRRVQLARYSDANVKEYLFKGVIVNYNYNFALGGLDTVTVYCADDFYLLAQTYMDEFNVTEQLSSARLSAVLDLPEVNYPATRDIATGTQTLGGAAAFTVTQGTNVLGYCSQINEAEQGRLFISRDGLLHFDSRLGSTLDP
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