NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211731_10023508

Scaffold Ga0211731_10023508


Overview

Basic Information
Taxon OID3300020205 Open in IMG/M
Scaffold IDGa0211731_10023508 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39167
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009453Metagenome / Metatranscriptome317Y
F014361Metagenome / Metatranscriptome263Y
F079583Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0211731_1002350827F014361N/AMSLLSAFNTQLVNLFDELCSTFPEDREIKMATEAIKGAKKINPRLILDLFVEHVYKECSTAVYERNAVLFRQVAQRKISNQFNEMISALSVFDKYWDTMGKTNQDVIWQYLKVLCILCEKATAQ
Ga0211731_100235083F079583AGCAGMASIGAEFMYHLVVNNIAPIMASSVAGIYTGYFSGRNAPTPTLVRSDIDDERELDLLQMDRMLKWMNLIFEEKFHPVDDTTPLDSEETHKAYKKELYSIYVTIVSDFKQYQSWKQYNSTIWMFSSYRNKNTKALARKILGDIKLFHEGLKMFSMFEKL
Ga0211731_1002350842F009453N/AMATAGTLLSDLDSKPPVLSNKDDDLVNKILADMNLPSSSNPIMNAPPPSGNGARMISAPNPNSTYPMSMDPATATAHMIGKEYPTTADFANLMHAPSYSHGGSYGGSMYAPVSQQMAPQPTLVESTHVNIYAEVLAQVKQPLLVAIIIFLVSLPIINVLIGHYLPSLLRLGGDLTTVGLVVKSLVGGFLFWFIQKILVPLMA
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Institute for Fundamental Biomedical Research
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