NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211731_10540215

Scaffold Ga0211731_10540215


Overview

Basic Information
Taxon OID3300020205 Open in IMG/M
Scaffold IDGa0211731_10540215 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)96367
Total Scaffold Genes159 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (10.06%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Associated Families9

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021773Metagenome / Metatranscriptome217Y
F026554Metagenome / Metatranscriptome197Y
F027848Metagenome193Y
F027850Metagenome / Metatranscriptome193Y
F039135Metagenome164Y
F041198Metagenome / Metatranscriptome160Y
F077311Metagenome117Y
F095528Metagenome / Metatranscriptome105N
F101172Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0211731_10540215106F027850N/AMRGFKNYNKRDIFDTIDKISVEKINNQVITKFDGRVMRIANVSNRYEVFDISKYLKEKIELIESNFTISKYQLFITKGQQYLQLISDIVNIGGVDFYKSFYILNSTDKSRRLSFYAGLHSQNFYYIGANNVGMSKKHLKGVTEAAEEASINLSGETFDEQIESLRRIVGHRVSFSKIRQSILGDKDEVPQINHRKFDAFKNSVRFANSDGRLTLSKEQRNMLYVDSEKLKEIKDDFYLDAFWVFESYMRLFNRQDSHVIKIETERIMSITQWAVRNNILESLGI
Ga0211731_10540215109F026554N/AMKLNINEMYHNYIVRIVIFALFTYKIQIRQPNVYKLSVIYFTQKRLPWKINLKINTGIQLSKDEEREILLNELLEGLESDFLSIVTVTFTTPLKDVTMEIDLKEEGKYQNFLYN
Ga0211731_1054021517F077311AGAAGMRFVVNSNREYYHIIEELICPFNEKKDYIILKDGEIIYWQNANDYYQDMTLNIEMMKEYINKIELTHYRSDTPLHRRKQKTLEFSKETLSKMIGYKREIKINEVLDKTPKEMVSLLKNILSEIEIK
Ga0211731_105402152F095528N/AMATKTSTPKLNIQKNYITLKLPTGNFTTSFGGAKVSGQLVKMKGAFQSLDNYVQTASKTKSFGEAMNDLLNPTLLNKLVPGWDKPVVAEVLTVGDKVVFKSELFSKKYPGTYDVRLQKGKYTYITVVNKLGVASIVGFDSTEFKKK
Ga0211731_1054021529F041198N/AMKVVCIRTSRYNKYDDLPLTVDKVYDVIETTSIPFNTHRYDDYTGPIYKLVNDIGEISGYSDDCVRTLTLDELRDLKIEELGI
Ga0211731_1054021530F027848N/AMIIFNTIKKAQHYVKFCNKNNDYYNDGYDWSEHKTHIDGDLVKVNHSGDSCGCGCDDYIYNYVTIIGRIKGYDIKSIRVGKLDNIGI
Ga0211731_1054021564F021773N/AMKWLKNYQLFKESKSYSNKNLISEICVSMVLLNNEFLDNILDRGLKARYSENSQIFLTDLKNLLIAKNRLHLGIFIDGKCQSDDEVSKINGLFDEIKFDIENDWNLLVNARVTARNIIDKLLPSQKISPEDISRIYWIGPNKDDDHQEDIVLELNDGQQFSFFLNKNLSGQKSASFNLFAEELIGENLDKLFNEEYLPKWNKLAQEWCSVLYENANSNIQRHIEKFLDMKRIDSMGYFEYFDVRHNDPKYKHLGEFIEEFDKNILKFSDLMMEIWKNRDICFNDPDKVYKEWSEIKIVILNSKIIENLLTTSLKTDFTEDIVKVEDNFKKAGGTVKMKLFKVMVDKMGCLERPVYYLANNGNQFTMVPSRDFFRKNYDDLVIKFDYHVNFEVSEDVEDDNDFKMEIKLEIDDQTLIDMFVIVKFSGGEMSGKLTSKYKFEIAPNFNYLTSEK
Ga0211731_1054021566F039135GGAMKKIKTYNQFKESILIDLSFQNVEDLLESLTIWYDALLSSVGAEEVNIFDTLKLPTDDFTNKLDLDLLHDNVEFINSLSSIALKKSQLENSDDYETFLNKPCKFMFLFDINSNELENPLYILMQVYNETLRKWDDVKIYRINDDVKKFYDKLTSRTIEIVDGDENYIYTTANGNEWILQNSDRENDVYKKSFRKEELQDLLSQKNVSVNIL
Ga0211731_1054021590F101172GGAMSELNEMKAYMRDIKLDILMNCPDVKIDVSKRYYNKFRLFYPSRKLIKYTTYIGGVLVGSRAIRCFTINGKSILERRVNDWDFVVTLDMAFKICDDMDIEEIPQVGGVISIKNQRRWAHPSYQSAYRVGPVDVQLIVKEELPDYTEIDGVRIANFAYSVSQKIGLTTDLQSKLTGGNGSIDKQYHKHISDMKEMIIKFNSLKWEKK
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