NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211731_10546086

Scaffold Ga0211731_10546086


Overview

Basic Information
Taxon OID3300020205 Open in IMG/M
Scaffold IDGa0211731_10546086 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2048
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F000903Metagenome / Metatranscriptome843Y
F001897Metagenome / Metatranscriptome620Y
F002433Metagenome / Metatranscriptome559Y

Sequences

Protein IDFamilyRBSSequence
Ga0211731_105460862F002433N/AMSVGEWTAVGGLVIAVLTAIYSSMRFMVKSIMRELSPNGGNSLKDQVSRIENRLDQLLLEIALNK
Ga0211731_105460864F001897AGGCGGMAFMDNYEGNKERTDRWIATYPQGRLETLIIEFNAEKGYVLVQAKAFRNQLETEPAGVDYAHGYLAAYPDKMKRWMIEDTCTSALMRVMALVMGGTEKATKEVMALVKTETPAADYDYWTTKHGDVPSYQTREEAEEVKDTAWQADAAPSCSHGSMRWNQSKPDAPKAWAGYFCSEKIKENQCKPRWYVLTSDGTYKPQV
Ga0211731_105460865F000403AGGMSDYMEVINPQTRICKLYFEGKVVEEYLVEQCDKCSKLMKFDKFGYQKGYGNENIIWFCAGCR
Ga0211731_105460866F000903AGGMISRLEEVQCMISAIRHCTDRNADHPTRFQKNLSWFEYVAQMAESMAAEWVVAKRLGYDYEPGITWDKSKADVGEHIEVKWSANPSSNLWIQESDRDDRDIAVLVTGNSAKMHIVGWIPVVIAKKPRYKNTSQNNWTVPQTNLQPIETLQWSNYAHPAI
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