NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211731_10856486

Scaffold Ga0211731_10856486


Overview

Basic Information
Taxon OID3300020205 Open in IMG/M
Scaffold IDGa0211731_10856486 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Erken, Sweden - P4710_103 megahit1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterSciLifeLab
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3297
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location NameLake Erken, Sweden
CoordinatesLat. (o)59.83763399Long. (o)18.6203826Alt. (m)Depth (m)0 to 20
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025648Metagenome / Metatranscriptome200N
F032560Metagenome / Metatranscriptome179Y
F086624Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0211731_108564864F032560N/AMQETYQDLENGLQNLLPMERQMLLAKIYHYAWYNHEAYKELITFINHWEKHSEFKAVFFNEGSEESINQI
Ga0211731_108564865F086624N/AMSEVKQSFGAWKNKTKDGKEVIKFTINGQRYNMWVNSYKDKNSQPDYKIYEDNYVAPTETKLVNDDLEF
Ga0211731_108564868F025648AGTAGLPIIEAFTGDKLNLISPVTLRENLAYIFTLIGLTRLPDVTELEVIEDYIRTTYPYFTIQEMRIAFKMAVQGKFECNIEHYEKFSPKYISGIMNAYKSKANQVRKNIPPPPEQPVKELTEDEIVEFTKSEWLSGKREDFNRVFNADKVFMILLKQKKLSFTQDQILETIKVVREDNLYRLNRMHPKDAKEYMKQIKNEDFIESQCKKLA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.