NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194125_10179191

Scaffold Ga0194125_10179191


Overview

Basic Information
Taxon OID3300020222 Open in IMG/M
Scaffold IDGa0194125_10179191 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015034 Kigoma Deep Cast 250m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1555
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Marinovum → unclassified Marinovum → Marinovum sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.9054Long. (o)29.4853Alt. (m)Depth (m)250
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013230Metagenome273Y

Sequences

Protein IDFamilyRBSSequence
Ga0194125_101791912F013230N/AMALFSKADLSKSKYIISIVAQIKQGKKIKVSDGKSYLFKKTKDIMNLESVQTDVSKYTKILFANNNHVPIFTDGKKSFRFIDIDKSPFSGMGGGTSRNVLGKQLSNAGELATIMSLRKDIKNAKDTGQSIFVNNPEAFADWLLTFQYTPIAVKKIVGSLNSFDIIHDATDRSDFTNAITLFLRKAKLSKDAWNPADIYIINKSARQKVTKDLKKIVETYEISNGLINIFNDKFYQLYKNKILYPISLKQLITEKASIDYNNIPGKIDVSDYNIKIEKFNCNLTTEGKEIGLFTFLNVDTKKQILLQVRGFPHSYGVAQTEITSDGTPTGGRLGKISTSIVDSIMAEYKDKRINSIKYFGTPKPFEDFDVNKIKETYEMYEKVIKNSKVFTEKFLTYNAYVKIINTSKSDIEIAKNMCMKIQGLKIMHFFVKNEKNLSTIMNKMINGAKKI
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