NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212227_1093586

Scaffold Ga0212227_1093586


Overview

Basic Information
Taxon OID3300020234 Open in IMG/M
Scaffold IDGa0212227_1093586 Open in IMG/M
Source Dataset NameDeep-sea sediment microbial communities from the Kermadec Trench, Pacific Ocean - N074
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJGI facility at Oak Ridge National Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)53291
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (85.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Sediment → Deep-Sea Sediment Microbial Communities From The Pacific Ocean Trenches

Source Dataset Sampling Location
Location NameKermadec Trench, Pacific Ocean
CoordinatesLat. (o)-34.34030667Long. (o)-178.1757117Alt. (m)Depth (m)8081
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F105216Metagenome / Metatranscriptome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0212227_109358613F105216GAGGMLRSITLGWLAFFAIACSESEPEPWNAAEMNALSEQFSHIAEAYAVVDICIPMIDADKDAKRSVISEIEVRRYSKLSQMNTEAELAKFFTYHRRSGGTDEQVAALDQIYRESHAAAVRVLTSIDSCTEAASDYANTILNTKVRPNP

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