NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0212227_1315493

Scaffold Ga0212227_1315493


Overview

Basic Information
Taxon OID3300020234 Open in IMG/M
Scaffold IDGa0212227_1315493 Open in IMG/M
Source Dataset NameDeep-sea sediment microbial communities from the Kermadec Trench, Pacific Ocean - N074
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterJGI facility at Oak Ridge National Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1868
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Sediment → Deep-Sea Sediment Microbial Communities From The Pacific Ocean Trenches

Source Dataset Sampling Location
Location NameKermadec Trench, Pacific Ocean
CoordinatesLat. (o)-34.34030667Long. (o)-178.1757117Alt. (m)Depth (m)8081
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025751Metagenome200Y
F071263Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0212227_13154932F025751GGAMDSETRKWMRLHNLIDDDNWDQIVYIYRVGANGQKITPYVAKWNMHAGLLDSIRDEFGTGEYHLMIRDGKTMVFTGTIGVARPLRR
Ga0212227_13154934F071263N/AGWSARSKDGTAETLWNPVFLLAEDLHQSLNAEVTRVTQVRRQSDDEVVTLYEPVDVDRGIHFVTQEEAERFSRKHALTLKSSSETPSYLNRNHDFYSTELATAVKAWMALFADGSFEPAGKTARQRIELWLRARKRRLKDNAEQRIASLVNPDTAKGGGAARTPNK

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