Scaffold Ga0212228_1439465

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0212228_1439465

Scaffold Ga0212228_1439465

Overview

Basic Information
Taxon OID	3300020235 Open in IMG/M
Scaffold ID	Ga0212228_1439465 Open in IMG/M
Source Dataset Name	Deep-sea sediment microbial communities from the Kermadec Trench, Pacific Ocean - N075
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	JGI facility at Oak Ridge National Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2454
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Sediment → Deep-Sea Sediment Microbial Communities From The Pacific Ocean Trenches

Source Dataset Sampling Location
Location Name	Kermadec Trench, Pacific Ocean
Coordinates	Lat. (^o)	-32.85037333	Long. (^o)	-177.65414	Alt. (m)		Depth (m)	9177
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F087217	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0212228_14394653	F087217	GGAG	MLRFANAFIVVFSLAFVFLAVPSTSHAAGLPKGVTIELIAEYASNTPGVEKILFRKITIKPGASWSLTVPDQSLCQGTKGTLSVTNHTSGKSAVKKTGDRWVTTPGHKVTLSNKGSVDHEHLFYTMVAKK

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