NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211707_1003524

Scaffold Ga0211707_1003524


Overview

Basic Information
Taxon OID3300020246 Open in IMG/M
Scaffold IDGa0211707_1003524 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000424 (ERX555934-ERR599105)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2453
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_072
CoordinatesLat. (o)-8.7788Long. (o)-17.9098Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031250Metagenome183Y
F057434Metagenome136N
F061908Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0211707_10035241F061908N/AMITKTKIENCFTMTARQKKLYKSMSIQEQDMFDYLVHVEDRKPDDVFFFLHSTFQPSRDDFKKPSFADLSTKQVVNTCYELQLKDVA
Ga0211707_10035242F057434N/AMFHLIYTRSNTEYYKGDVFESNYTLYRNIPYSELSKFLEMQKDPELLKECDTKYFEHQEKNGITDTCFHSEISIVDDEEYFKTYKYVYRSSYNGPSGLIPEEEDYFMDYGQKSNFMLIHDYNPNYTWFGKDWTQEMINAEYEKRELDNQARV
Ga0211707_10035243F031250AGGMEGVYNKENLFAEFQMQKTNEDKVKFLKEMKQLKKDQPSMFRGTKISQKQFDNLIAEWSKDKPWAEINRQIKQAQKHQDDVDNILNND
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.