NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211529_1005471

Scaffold Ga0211529_1005471


Overview

Basic Information
Taxon OID3300020258 Open in IMG/M
Scaffold IDGa0211529_1005471 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000073 (ERX556061-ERR598949)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2094
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_038
CoordinatesLat. (o)19.0108Long. (o)64.532Alt. (m)Depth (m)25
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F099407Metagenome / Metatranscriptome103N
F103877Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0211529_10054712F099407GGAMSNDNGNKSGTLTGNATVDILQRKVTLKKELIHLRKLKIQEDRQIQLQNQIEEFDNVLKQHRLKK
Ga0211529_10054715F103877AGGMEKQVKKGETMEKALIVNTQYVENYDFDGGNHWKFKGGKEYVISFGVTKEIYEEDAYGEGEHSYYECPEVSEATIIALINQLGNASSDGYQEFVKSWETTDFPKALTENELEWHHDKEAFDLFKATRMNWKDLEKQVKDGYFGG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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