Scaffold Ga0211519_1000251

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211519_1000251

Scaffold Ga0211519_1000251

Overview

Basic Information
Taxon OID	3300020266 Open in IMG/M
Scaffold ID	Ga0211519_1000251 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX556082-ERR598951)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	21198
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Deltaproteobacteria incertae sedis → SAR324 cluster → SAR324 cluster bacterium JCVI-SC AAA005	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_025
Coordinates	Lat. (^o)	39.3599	Long. (^o)	19.4084	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F057165	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211519_10002511	F057165	AGGAGG	MMQRVRFSVSFSLLGLLAVASGCSEMSRVELTKNSPGEPTVLEGAWASVCYPVELEGTTYSARETVVFRGNSANSVVRKYEELADCNGEGIEDVQETSGSFSILEEQINVEGKDLIGVESTFTRSLSLDSESIGITYATRRYFHVQGDRMYVANDREDDKLEIESEHYWVRQ

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