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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020266 Open in IMG/M |
| Scaffold ID | Ga0211519_1009149 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX556082-ERR598951) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2606 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_025 | |||||||
| Coordinates | Lat. (o) | 39.3599 | Long. (o) | 19.4084 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001656 | Metagenome / Metatranscriptome | 656 | Y |
| F016994 | Metagenome / Metatranscriptome | 243 | N |
| F022908 | Metagenome / Metatranscriptome | 212 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211519_10091491 | F016994 | AGGAGG | MATENNTTFVAADNSSLLGKELEFITIDAGEELANHQLKNETQNAIENTVRQFGNIVGAGPLFDTNASRTYIVEGTDMFVGSPASAGGTFTFTESGADGSAVGTLQAALKALGTVDGIDLNDSGTTAKIENLEL |
| Ga0211519_10091493 | F001656 | AGGAG | MTTRNRSTDMVRRQAYNGKGLTFVEVIFDDDITTSATTPESNGSVFDLVTRVVGKSGTLLASSYRLAAKATDNDAAEVASIDANESIDSYQYIVEGTPGQFNKADSVGDINMDVTATIVGDAEADLEADILEAITTTVGDSAENVHVKIRTLLPEGHVNGDANTFVGMFDQRGDA |
| Ga0211519_10091494 | F022908 | GAG | MPTHLDEAIKIILNPDSKLRDKTPRIYQLPKEEHMPKQFTNLKRMRFLNHDVSAGRNIKRWLWRDYNPEIILQEPPFDKYEDQSEIFTLIRKPDERWWSGIKEMFYFMPWYGWWANDKIMEQWPHFTRGTLRLHDVMEQVRPKHLIKCDDGLNDRIIKFAKTNGLLCYGNIPHERALRHTKPDIKKLEDKGVIELRAWLRQNPDRQKQLDDYLEPDWQYWEQVEYQD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |