NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211658_1000092

Scaffold Ga0211658_1000092


Overview

Basic Information
Taxon OID3300020274 Open in IMG/M
Scaffold IDGa0211658_1000092 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000900 (ERX556029-ERR598943)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26628
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (35.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.254Long. (o)-85.2248Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000464Metagenome / Metatranscriptome1105Y
F040935Metagenome / Metatranscriptome161N
F084114Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0211658_100009212F084114N/AMSLQTVLNIMRSPQNAMRLKDPVIFDIDKKVGWLHLTGGAMNSVLAWLNEFHLHQFKEIPKDDVKKYDRDIFAILKEPEKRYWDGITEWSTCWGTHEWWQHDDIMEWFPHFDRYTLRYSDMIEQVPDVKHFLKVDNGLSDKIETLAKEYDLNCPYGIDKIRPRYKRDKTTKNIHETVTPKFKQLVNDSPELKKKLEDYLAPDVWYYAKAK
Ga0211658_100009235F040935N/AMLMLEEYVYKMRVTKNNKTETWWLCLPLNMIDATVQDHYDWGADAVELELMPNITREQFHDKLPKS
Ga0211658_10000926F000464N/AMVNEVFAVANIYTFMKMSNQQKIRLYSHHDHDVDFEDEFWPMLGILIGILVLWTGFIHLVDYLTFDIIPWWLEPFTITPIIFMIIMKELYDSLNPCHWWPMFWGYEAKLPDEDRITIRPLDVQRILDQHGGRLNVHIVDYEHIKFRRKKDAVIFGLRYF
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Institute for Fundamental Biomedical Research
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