NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211658_1002696

Scaffold Ga0211658_1002696


Overview

Basic Information
Taxon OID3300020274 Open in IMG/M
Scaffold IDGa0211658_1002696 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000900 (ERX556029-ERR598943)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4785
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.254Long. (o)-85.2248Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002495Metagenome / Metatranscriptome554Y
F002586Metagenome546N
F003365Metagenome / Metatranscriptome491Y
F008307Metagenome / Metatranscriptome335Y
F043149Metagenome / Metatranscriptome157N

Sequences

Protein IDFamilyRBSSequence
Ga0211658_100269611F003365N/AMVSMLKKIGKEWTRKEEGGMFTADHLSPTQLNKNIDQWFFDYCKLTAAERKKLKPNLKMIFGGLAGQAMQDMITENLTLEQVMKGKK
Ga0211658_100269613F002586AGGMVKVNLDPNDVELAYTIAQKRFIGNLRMNKGFSYGYDKNLKNQLYDGFLGALGEVSWAKWTNSYHNASYTDNLQRYEDSDFQDNIEIRTQNKKSYNFLLIRPGEKKGKYILIIKNDDKNFNFNIIGSFIYNDDLPPEKLSNFGYDHRPAAYKIELNELTPMEDNERQDKF
Ga0211658_10026963F043149GAGGMSLRNSNTRLYTKLDKAHKKIMGARENGRQCVITLQNFKEYNQLFRRIVEAENKDARFLY
Ga0211658_10026964F008307AGTAGMTKVIKTSSIELAADFEEIFDGANVEEATKKAYDQKMPSEFAKVNITEHKLVSANIKVIGEVNDELKK
Ga0211658_10026968F002495GGAGGMQNNGSGKQKDWVLFPYDANNEKAIKIDFSGNVNLDNGNKGTILGVKAQSKDGNTKFVKVYAQVGVLFKGDDKFTGEMNYPDAGGHKGLIGWLNDQGTILSGYKNEPRPKQNSQKPKQQQAPF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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