NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211568_1015618

Scaffold Ga0211568_1015618


Overview

Basic Information
Taxon OID3300020277 Open in IMG/M
Scaffold IDGa0211568_1015618 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001971 (ERX556102-ERR599152)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1891
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_137
CoordinatesLat. (o)14.1468Long. (o)-116.6821Alt. (m)Depth (m)375
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006865Metagenome / Metatranscriptome363Y
F013774Metagenome / Metatranscriptome268Y
F029469Metagenome / Metatranscriptome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0211568_10156182F013774AGGVLDDKLLELQRKKLQRQILYLRSELEETQMIFQECLGDFDSEFGKYFKDNINKKNKNESMDPVEFDIPEKDVNIVFRMIAQKTHPDKLVKEDTSSSSYKAKVEMYKEAQRSVKNKDWSRVVEIAMELDIDISDVKNDDSEYLVESVKKLMNKINQLKSTYAWKWGNTPDQEREIVKGMILQSLGLSKIKEKENGK
Ga0211568_10156183F029469AGGAGMSNKPEHTSYFIEIIRRLKEMEVEFRKAPNQPDDKVYGEMDGKIELMELPFPPEMFDRLSSDEKETLYIWLNRRNMPQA
Ga0211568_10156184F006865GAGMGKINKIIKINDVLYECSGTMSVESSEEKGTEYWKERWGSDTVLRNGNDYYYCRVVINAEFEDI
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