NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211606_1000466

Scaffold Ga0211606_1000466


Overview

Basic Information
Taxon OID3300020278 Open in IMG/M
Scaffold IDGa0211606_1000466 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000674 (ERX556076-ERR599151)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19655
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (56.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_124
CoordinatesLat. (o)-9.1552Long. (o)-140.5284Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013421Metagenome271N
F017147Metagenome / Metatranscriptome242N
F020191Metagenome / Metatranscriptome225N

Sequences

Protein IDFamilyRBSSequence
Ga0211606_100046610F013421AGGMDLTDFKYYWNDVPGKGLCRNNLIYTSLINHSKSEFCMWFKHDSEYHQGHEQVVDQDLMESKYSREKDFLLSLDVDHKDIVPELTRIDSDNQAIYFKIQGVDFWEESHGKKYDEVLPDWEKQMLRILEKHKQLGIYKYSLHPSSYWVVNRELKNVNYFFAYRNNEPNITVKDHLSHISTERQKELMPQMTKLGIEADKPYPFDKLQILCLESFRNVYPDSFIDKAISIYK
Ga0211606_100046616F017147GAGMSNWENFYKYKKGLAVTNLLYEPLVSKDKKIFCMNWNKNQYHPNEFMTEELYNYWFNQECKFLMHLHHKNYIPEILLIDTKKRVIEFRWYNKNLNVMIENNTINKIKNWQLKIKRIKEDLERDLIFKINMYPHTFYFDDDGNAHIMDLYGCTDNKSRYLDTKYLKPLIRNERFNKFIVNERLDTHALYKDTIKTNYAEWPGDFLNA
Ga0211606_100046618F020191N/AMCGDSNTININVQIMSKNVIKSIYQNSIYQKILHEIDGVIFPLSDQWKRIGISVSGGLDSALMAVLLCSIITQNLWLTKVHIITNIRCWKTRPWQRQNSLDVFNWLVKSFPNIEFKRHENFIAPDLEWGSKGPNIIDEYGKLKSGNQIELRAHAEYVAHSEKLDAWFCGVTQNPEKEFDERLADRDVILDTLGDKTLDKLVKPHMGGYACHPFTYVQKDWIVAQYKKLGIMDLFDLTRSCEGDADTYPDVFGDLDYRTYVPGSPVPVCGKCFWCKEREWGVANSDKE
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