NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211591_1000649

Scaffold Ga0211591_1000649


Overview

Basic Information
Taxon OID3300020280 Open in IMG/M
Scaffold IDGa0211591_1000649 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001121 (ERX556044-ERR599114)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10595
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (38.89%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_125
CoordinatesLat. (o)-8.895Long. (o)-142.6228Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033841Metagenome / Metatranscriptome176N
F034215Metagenome / Metatranscriptome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0211591_100064911F034215GGAGGMPSKKPSTKKETPENAPEKAIVSELGVNETNPVPEKSGDVVTGHGNTIHYS
Ga0211591_10006492F033841AGGMEELKPETIKIVTPNPTNFRYSYLVTPDEYKGVRKYKAECLIKKGTMMKDERGKEVDAVEHIFGQLEGLLERWKVALKEHYPDRKFSLTKNKHGEPSLPYFLEDDYLVIRTSKKAGGVKQNGDVWTNPPVTFWANEDPLRLMTEEEKKEYEKISPALEGQMSMKCSGYDAGANGVGIRCQPLQVIVRRHAEWTGSPDFEAETQPSYEEKRTASSAADF
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.