NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211624_1032168

Scaffold Ga0211624_1032168


Overview

Basic Information
Taxon OID3300020286 Open in IMG/M
Scaffold IDGa0211624_1032168 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000470 (ERX556011-ERR599131)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)718
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_068
CoordinatesLat. (o)-31.056Long. (o)4.6606Alt. (m)Depth (m)700
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013820Metagenome / Metatranscriptome268Y
F036736Metagenome / Metatranscriptome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0211624_10321682F013820AGGAGMVPTIVTMIDKLMPGGKTYALMGLGVLMTVCQMGGWHTFSSEAWGLLGIGGAATWKMGQDRDATVKKK
Ga0211624_10321683F036736GAGGMDKLNEMLIGTLALMGAFITKRVFNNHDTLSDRITALEKIVLTKEDINGLERDVSMIVTHLITKGKSD

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