NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211624_1037802

Scaffold Ga0211624_1037802


Overview

Basic Information
Taxon OID3300020286 Open in IMG/M
Scaffold IDGa0211624_1037802 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000470 (ERX556011-ERR599131)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)659
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_068
CoordinatesLat. (o)-31.056Long. (o)4.6606Alt. (m)Depth (m)700
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011620Metagenome / Metatranscriptome289Y
F019388Metagenome / Metatranscriptome230N
F072734Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0211624_10378021F072734GGAGMSMMKFDDSKIKEIRKRKEQGLPPPPIDGDVVEQSKNAKGGSELIYQRVKERVPDDLWNYFQIILSRVREYEDKPKILWFQDTS
Ga0211624_10378022F011620N/AMIDKIIQVVLKFFGKEKPEPPTEENNESLEALERIEALDKIGESS
Ga0211624_10378023F019388AGGAMRTEQNPYLVETKNGQTLKFSKIDADNEAVIKQLDGDDVEVFHDGKLQYKLHGIEQGRLF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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