NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211520_1000180

Scaffold Ga0211520_1000180


Overview

Basic Information
Taxon OID3300020294 Open in IMG/M
Scaffold IDGa0211520_1000180 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_E500000331 (ERX556124-ERR599153)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14821
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (89.66%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_025
CoordinatesLat. (o)39.3757Long. (o)19.4167Alt. (m)Depth (m)50
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019027Metagenome232Y
F028553Metagenome191N
F029154Metagenome / Metatranscriptome189N
F080516Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0211520_100018011F028553GGAMDEKQGAFADLDLKDKFDFDLPVSGNINIDGTSNEPRSELDLYKTFDGRMGSVTPSMGYTTEETKYRDGMADVENRARTVRLGLDGSTTLGPVDLSGNVMGSRTMQDKTYTFPFATFTQGSSSTFSKLGAAAKMGAFDFNVSRQKSSGMEPVYSGSIGMNFGNGGRISYSDSSTGEPRIDARYRMEF
Ga0211520_100018021F080516AGGMSLERIEELGQILSKLDLTISHMLSCKITPDDFPDLNDALTMLEEARGMLRKAYQNVRTEYDAHL
Ga0211520_100018022F029154AGGAMELQKIHGLITNITQHYSAFAVNTEGQNTFITNNLARFLQLSVGDQVLMDVVPNHPDKAQTIPYRAVGCVKLKESLPEESPEQPEHGVLTEIIERQKQTPQQIAEDLKAVLKAADTYLITSEVIAAYREENPEHAATTDKDINNNLARMHSKGKIAKAEVWGSPEQSKCSFNLWAHNVSRFTL
Ga0211520_100018027F019027AGGAMSGATAQDFAKWEAHAKSVDYHALVFIIQDCRNAREAMKGWNPEKENFYADQGMTYSDELRRRIK
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Institute for Fundamental Biomedical Research
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