NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211520_1006954

Scaffold Ga0211520_1006954


Overview

Basic Information
Taxon OID3300020294 Open in IMG/M
Scaffold IDGa0211520_1006954 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_E500000331 (ERX556124-ERR599153)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1887
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC204P(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_025
CoordinatesLat. (o)39.3757Long. (o)19.4167Alt. (m)Depth (m)50
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013576Metagenome270Y
F020447Metagenome224Y
F054159Metagenome140N

Sequences

Protein IDFamilyRBSSequence
Ga0211520_10069542F054159N/AMPCFCLIYILPIWLMTTKTTKETMTKNEKNITIKFVDNQTHGYVQVSKYDLEGWNVDTKQFSSYSFYNDNNACYYLEEDCDGYKLHNILTKMGYIINYATNNVALNYMNDPMFKRINNIS
Ga0211520_10069544F020447GAGGMIKQIMIVSIMITFILFLGYLGIEYLITQLISDVFAQIESK
Ga0211520_10069546F013576N/AMFKKIDKELEHMQPFEYICSDGYVGSNILPDHVKKFIADKKATQKEQEMIDTWKDEIKLKQGEK
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