NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211662_1036977

Scaffold Ga0211662_1036977


Overview

Basic Information
Taxon OID3300020300 Open in IMG/M
Scaffold IDGa0211662_1036977 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000959 (ERX555977-ERR598981)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)860
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_100
CoordinatesLat. (o)-12.9057Long. (o)-96.155Alt. (m)Depth (m)177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044546Metagenome154Y
F074751Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0211662_10369771F044546N/AYKNVILIGTMERPHTKIKYKSPKYCSQCKREVYHTTHSASSYWVDWYGTELKPICVDCYK
Ga0211662_10369772F074751N/AMKELIMALMLWIGANTDYKVDFPVPQVERMDIIMEEIIFPTYEGFYDYKKNIIYIRRGLDIKDSWTQGVLLHEVIHYLQDMNNTQFECTAEMEKDAWPLQKKYLKEVHNYIWNYDILWYLVISNCGQY

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