Scaffold Ga0211650_1000681

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211650_1000681

Scaffold Ga0211650_1000681

Overview

Basic Information
Taxon OID	3300020301 Open in IMG/M
Scaffold ID	Ga0211650_1000681 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000925 (ERX556086-ERR598997)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9600
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (35.71%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_109
Coordinates	Lat. (^o)	2.0596	Long. (^o)	-84.553	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F017147	Metagenome / Metatranscriptome	242	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211650_10006819	F017147	N/A	MENFNNFYKFKGGLAVTNMLYEPLVSNNKKIFCMNWNANKYFENAEMTDELYNYWFNQEVKYLFKLKNKKYIPEVINIDYSKRTIIFRWYDKSLNWLLETKQINNIPNWQDKIKAIKDDLEENDIYKINMYPHTFYFDDEDNAHIMDLYGCTDVDTKFLDIQFLKPLIRNDRFDKFIVNEQLDTHELYNETIKTNYAEWPGDFLNA

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