NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211681_1006151

Scaffold Ga0211681_1006151


Overview

Basic Information
Taxon OID3300020309 Open in IMG/M
Scaffold IDGa0211681_1006151 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000795 (ERX556064-ERR599104)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2354
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_085
CoordinatesLat. (o)-62.2658Long. (o)-49.1658Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016211Metagenome249Y
F039830Metagenome / Metatranscriptome163Y
F066157Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0211681_10061511F066157N/AMWAIVLATMLATGEPKVPLIMSSYSTFNKCRQELIRVGAIGGYEPVVSPMVGYAVVKVTDEKTITAFCVKDMRGI
Ga0211681_10061512F039830GAGGMWSSPLELYPVHVSPDLAPLGQSLLIEPSVNRVNAEYLVVQPSREPYGIPQEYTRRVWIC
Ga0211681_10061514F016211AGGAMNDRELTAAEKNEIAELAADKAYERFYLAVGKSVTKKILWITSAVLLASWLYFKEGTF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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