NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211491_1018618

Scaffold Ga0211491_1018618


Overview

Basic Information
Taxon OID3300020318 Open in IMG/M
Scaffold IDGa0211491_1018618 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B000000475 (ERX556107-ERR598973)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1137
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_066
CoordinatesLat. (o)-34.8986Long. (o)18.03Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040347Metagenome / Metatranscriptome162N
F041247Metagenome / Metatranscriptome160N

Sequences

Protein IDFamilyRBSSequence
Ga0211491_10186181F040347GGAGMNRWDITVKQSNYDFNPFRESDHGKYFKTVANIYEDWSKELEYANKQQYDFYWPSPVKPDGDHFDYEYENKLVEDWGIPKDFVIYRMWTATKKECPILCGLADKLGLEDAQVNIQTQTTGMMLHLHIDSLTGLRKERKDQSSSRATDPEWGRVFVMLEDWKPGHIIQFGNTYVPPWKAGD
Ga0211491_10186182F041247AGGAGMTNFYSIQADKIKFNLDMLVDMYNTIDQTKWVHRQDKLPQYWPIDENNTFDRNHEFYRLLKENVNADIDETRVYFSRVHPGGIPNHWDFENFTKLQFPVICDEEDNDWSKSPVIFIDQFDQVVEKVEHTNNTPIIYSANYMHGTIKSLDNKNDRITFVVDIKYWFARVRSKYNKGTLFTNNKAFWSMA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.