NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211673_1002705

Scaffold Ga0211673_1002705


Overview

Basic Information
Taxon OID3300020323 Open in IMG/M
Scaffold IDGa0211673_1002705 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001027 (ERX555979-ERR599120)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4877
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_098
CoordinatesLat. (o)-25.8126Long. (o)-111.7386Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017147Metagenome / Metatranscriptome242N
F020191Metagenome / Metatranscriptome225N

Sequences

Protein IDFamilyRBSSequence
Ga0211673_10027054F017147GAGMPKWKNFYKFKGGLAVTNLLYEPLVSKDKKIFCMNWNKNEYHDNEFMTEELYNFWFNQELKYLLHLSNKKYIPEILLIDTKKRVIEFRWYDKNLNVMIENNTINKVKNWQKKIKAIKDDLEKDNIFKINMYPHTFFFDDEGNAHIMDLYGCTDKHTRYLDTKYLKPLIRNKRFDKFIMNERLDTHRLYQETIKTNYAEWPGDFLNA
Ga0211673_10027056F020191N/AMSNNVIKNVYQNSLYQKILHEINGVIFPLSDQWKRIGISVSGGLDSALMSVLLCSIITQNLWLTKVHIITNIRCWKTRPWQRQNSLDVYNWLVKSFPNIEFKRHENFIAPDLEWGSKGPNIIDEYGKLKSGNQIELRSHAEYVAHTEKLDAWFCGVTQNPDKEFDERLADRDVFIDSLGDKTLDRLIKPHMGGYACHPFTYVKKDWIVAQYKRLGIMDLFDLTRSCEGDADIYPEVFGDLDYKTYVPGSPVPTCGKCFWCKEREWGVANSDKE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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