NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211510_1042722

Scaffold Ga0211510_1042722


Overview

Basic Information
Taxon OID3300020336 Open in IMG/M
Scaffold IDGa0211510_1042722 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_E500000081 (ERX289008-ERR315860)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1127
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_023
CoordinatesLat. (o)42.1659Long. (o)17.7285Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000302Metagenome / Metatranscriptome1337Y
F007531Metagenome / Metatranscriptome349Y
F037814Metagenome / Metatranscriptome167N

Sequences

Protein IDFamilyRBSSequence
Ga0211510_10427221F000302AGGAGMVETMTQETKDRIAQMERQKIELENQLELLGYSGNLVRMHQIEEEIYEIEDTIRKLLP
Ga0211510_10427222F007531AGGAGMQRIQRLILDFTKDTGLTDRREMTHGTLYVKLHEEKECDTFHKVLRTFFKEQIDNEGGVNMYAVGDEFAFDFVPADREAPVFADEEENGVWSEFAEEEMFNNMPDEVDTIMNLEAESKRG
Ga0211510_10427223F037814AGGGGGMEISLAISIAMLLVIIISFGYMLKELKECQKIIKKMQRRSRKYIREVVSND
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