NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211594_1016073

Scaffold Ga0211594_1016073


Overview

Basic Information
Taxon OID3300020340 Open in IMG/M
Scaffold IDGa0211594_1016073 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100001121 (ERX555960-ERR599119)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1651
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_125
CoordinatesLat. (o)-8.895Long. (o)-142.6228Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006043Metagenome / Metatranscriptome383Y
F028814Metagenome / Metatranscriptome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0211594_10160731F028814GGAGMGMLMMLKEGGSLVIDTIGNLPIDEDIDLLPEATVSLNVDLQLMLWSDTGFALQ
Ga0211594_10160733F006043N/AIEQTTGTGDVEKQIAEVSRFIVGKVVLKTSDGINTPKVKSVQFRALARPELVVAQIPINVSDRVERPNRKPIKVKGLGEAIYSELRTKEGASVTLEIFDPAEVIRGVVERISYPINSNVERGSVTQYAIITVRGTRQQTVTDVTSTEVFGIQQLGLLKFGA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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