NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211604_1108552

Scaffold Ga0211604_1108552


Overview

Basic Information
Taxon OID3300020342 Open in IMG/M
Scaffold IDGa0211604_1108552 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000674 (ERX556117-ERR599036)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)539
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_124
CoordinatesLat. (o)-9.1552Long. (o)-140.5284Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005669Metagenome393Y

Sequences

Protein IDFamilyRBSSequence
Ga0211604_11085521F005669N/ASWIYNTSVKFTPNNILRQSSSSFRISTQSDHGFLEEDTVEVLDAQSDLIAVGRVLSVINGATFVLGDLPGVSEFSINFIRRRLKRGNSSLHDNITKYTVDVQNVYENVSKNSLFVTSPSIPSLGNEPIIAPDRSVTWTGATGGDLIQLIQVTEGAADHGFYSGEVVTYNVISGFLGQLI
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Institute for Fundamental Biomedical Research
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