NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211504_1000019

Scaffold Ga0211504_1000019


Overview

Basic Information
Taxon OID3300020347 Open in IMG/M
Scaffold IDGa0211504_1000019 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)73929
Total Scaffold Genes71 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)54 (76.06%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_067
CoordinatesLat. (o)32.1Long. (o)17.7Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030051Metagenome186Y
F089504Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0211504_100001953F089504GGAGMRLLDKIALNSLIKTITSFILAILKMFAPSKSDSITPRERKRPVLDFLKKWMK
Ga0211504_100001960F030051GGAGMADPNTLGHFFENFTTHMASVVIALIGFWTGFVRNLVSRKEVEEMINHQSQYMKDREFIMARLEDHKADSATLFRALNKNTEVMSELKVQIAMLSKTLEALENRIERT

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