NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211504_1001407

Scaffold Ga0211504_1001407


Overview

Basic Information
Taxon OID3300020347 Open in IMG/M
Scaffold IDGa0211504_1001407 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10887
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (63.16%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_067
CoordinatesLat. (o)32.1Long. (o)17.7Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026281Metagenome / Metatranscriptome198Y
F063646Metagenome129N
F082524Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0211504_100140711F063646AGGAGMNAYVAETYLSHNKKWLELKTLSTLSEAEEFLCEHFDNIVTSLDNGDCGDMSVETMMKNWGKKFRITEMEVV
Ga0211504_100140716F082524GGTGGMSKILISEYWIQDNGGVVRVYKNGSAYELIAEEDDGTVFLHSKNIPRLETAENRAEEIALLV
Ga0211504_10014074F026281N/AMATTVAATAVAQDASESPLMSNATVGVETDLQGNADWTVGAELGIAGFGVDAGFTLNDRGDNAADDYSVGLGTGMDLGVASLDTSINYAWGATSGADLIGRGDGNTWGDLTVDPELKLTPGIIGGEYAWVGASMDLASAGEIDLGWAGATYGVGYEHDLNANASVSISYGWSVDVVDDDDDTTVNDWTTTADGLKVGVGFKF

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