NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211504_1002372

Scaffold Ga0211504_1002372


Overview

Basic Information
Taxon OID3300020347 Open in IMG/M
Scaffold IDGa0211504_1002372 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7860
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_067
CoordinatesLat. (o)32.1Long. (o)17.7Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011228Metagenome / Metatranscriptome293N
F012352Metagenome / Metatranscriptome281N
F036708Metagenome / Metatranscriptome169N

Sequences

Protein IDFamilyRBSSequence
Ga0211504_10023723F011228AGGAMDLLDLTPTSDTVDVTIVHPTNFDILTNDDDTPMVITVYAPHSKEYKAAVHEQTNKRLKQAQNKKKVEITAEDLEDATLDLLAKTTKGWKITYGGSKPKFSITKAKEIYAEVFWIRDQIEEAVANSLDFTKA
Ga0211504_10023726F036708GAGMRTQLKVMPSLQRKIDGLKQLAEQQVERKLTDMAVDAVGLGTIRVPVDTGAYVTSFSFNVGAGRPRGKSSKGKPRNQNAVAKMNEGLSNLIQDIERIPSLLDTTRIELRNNSPHARDVERGEGWPRTNGYFVFTQLKRKYNRG
Ga0211504_10023727F012352AGGMAFSRGYNLLKMVDEFGEPLTLKKKTTAGTYNPTTGTVTGSATTDYSFNGYFYNYDQGIIANVDEIRRGTRKCVVPALGLEVEPDDEDQIIGNGDTVNVISVVTIFSNGVKLCFLCDVRE
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