NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211504_1003103

Scaffold Ga0211504_1003103


Overview

Basic Information
Taxon OID3300020347 Open in IMG/M
Scaffold IDGa0211504_1003103 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6449
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (54.17%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_067
CoordinatesLat. (o)32.1Long. (o)17.7Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005751Metagenome / Metatranscriptome391Y
F059457Metagenome134Y
F089161Metagenome109N
F102072Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0211504_100310314F102072GGAGMTKKNEYEIERDKQKLLRKKAMNSLTKEQIDAINFTHETLRDALSMLTECHDLYLSDINKLNDAFWKLKHQFNLENNND
Ga0211504_100310316F059457GGAGMKTTKIGNTELYTARVLNMSVAQYYGVVKEYSEILNQAREINKEQLKKDKEKAELNLIYGVRYNLNRLVLEKINGENNE
Ga0211504_100310321F005751N/AMDIYSIEFDPNKLSHQHEELGMRFADFDTAVELMKKEEKMIVAELTIYYSKNGGYKNMTELNGLIYSNKKFKDFFDRYQRNLKERNQSKIRFETFKAFRDDLRTKVVNERELAKHNL
Ga0211504_100310323F089161GGAMSDKYNLSDELNQSRELDQDQEKETAIYKHLADIGVMDKLVFALNEYIIKFGRTSNVHDQCFDLKLQVLANKKHLQDWVDKI
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