NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211504_1006298

Scaffold Ga0211504_1006298


Overview

Basic Information
Taxon OID3300020347 Open in IMG/M
Scaffold IDGa0211504_1006298 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3968
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_067
CoordinatesLat. (o)32.1Long. (o)17.7Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008425Metagenome / Metatranscriptome333Y
F024797Metagenome / Metatranscriptome204Y
F040126Metagenome / Metatranscriptome162N
F049672Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0211504_10062985F008425N/AMKKDKDITYKQFIAHMDKGNKVYMKKPKSWQKVWFWWESKKEKWFLNKAFDKRENGVVKPEPSVWITAKQMEHHMDHMVRMGYKYYINE
Ga0211504_10062986F024797N/AMSEFLRTTMGRKLLEKDIPKLASVLERIADQMEIKNKLEEKKFRLDEKIKKLQIKDINEK
Ga0211504_10062987F040126N/AMKKVPLFEDFIPVGFAPSDSASFSLGGTNRAETGYDMNAIVGPVQTLGNHVAEQANSYESNDNAEHTAEAYIKEAKKHINDKIDEACESYSAMGESTLNEGTDISSWNQAGIKGSDNAQITTFVGPKDIEDFGLGRKCMQINIGRNYVQLNPADIVELKDLLKNYKV
Ga0211504_10062988F049672N/AMIPKFNNYLNEASDYEFKPNEAATRLKAREKENIQRYRAAQDRGDNYAIALYELKIKMDKIDLEGLKVQTEIHKLKTKFGK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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