NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211504_1008396

Scaffold Ga0211504_1008396


Overview

Basic Information
Taxon OID3300020347 Open in IMG/M
Scaffold IDGa0211504_1008396 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3243
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_067
CoordinatesLat. (o)32.1Long. (o)17.7Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030435Metagenome / Metatranscriptome185Y
F053299Metagenome / Metatranscriptome141N
F059965Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0211504_10083961F059965N/AMPLPPTMEMELMELGILKSDTEELESIAEQTGFYALRAETIAWHNTLIVDGEVMF
Ga0211504_10083964F053299GGAGMNNYKPYYRTDKMKQDELRAAKYMGILFFTMIGFSFIGFAFVLVKAMLYMTGLFL
Ga0211504_10083965F030435AGGMNNQDILDMCKRLASKYYNHQDYDDIVSEGVVLCLNMRAEGITEPFKLYYSARTAMFNYVNVGLSKLSYSKGMRGREAALTDTTTYVDLEEAQIPAEDLFGSYELKDSIQTLKKELTDKEWKTFLVLYINNNNITEASKALGVSRMHLNNLRNDIRDKLVTICDVTL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.