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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020347 Open in IMG/M |
| Scaffold ID | Ga0211504_1008537 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3207 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_067 | |||||||
| Coordinates | Lat. (o) | 32.1 | Long. (o) | 17.7 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F025513 | Metagenome / Metatranscriptome | 201 | N |
| F033629 | Metagenome | 177 | Y |
| F051178 | Metagenome / Metatranscriptome | 144 | N |
| F104070 | Metagenome / Metatranscriptome | 101 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211504_10085371 | F033629 | N/A | YKGIMAIEQLDKKGTAYLQGIQGLNYLGKMSGYKKPMNILKSYLKSDGKRKTLYLKFDEGKIDEVLKGVYQIKINPSDKNFLNDLRDELEDNGEDIDKSKTKPGQTITFKSGFQLYLSGRTLSNVIDESGSAVAAKKPTNDQQEDGFIINLKKGKMLENLQINKEIGFQFGKDWYNSFTRSFAGFTSKIISKKDLNQYEFYRDSDNKKLEMLNQITDPAILPSSKDNWNPSDVWAVKIDQKVRLAKEIDKLYTERIKNNNVSIERINKFIETQFKNKSLIGISLKQVLGNSANVDKITKDAKYIDSVKFLKFGSKMEFDVLQTYFDINVKMSCIKNNTLDYLFRFRPRGSSSATTNNGEGRLSGSGPADGAIDKKNVLSVLLPNADNITKEKYGKSKTILEALNFLVASKKYKGLQSWTTKGKYKFLNIKNLDKKGDDKLIRRGLLNLNYAYLIDTYRDQKELYKKFYLAAKKVNEFSSIHYKISG |
| Ga0211504_10085374 | F104070 | AGGA | MIGAALNSLNIYPWGPIANLFGGMTWLIVSIMWREAALITTNIVLATITFIGLIYTYTH |
| Ga0211504_10085376 | F051178 | GAGG | MKKGKCTVCKKVFTVKKGETLKGKLGIIPVDLCKTHLKKVLSYDEMNLSDTRVSA |
| Ga0211504_10085378 | F025513 | N/A | GTLAMVSAVGAIETDQYLLGAAAVMTGITSYAMTLFSQSLYAEAEVREKSSWNDLNEYYINGEK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |