NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211504_1010836

Scaffold Ga0211504_1010836


Overview

Basic Information
Taxon OID3300020347 Open in IMG/M
Scaffold IDGa0211504_1010836 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2731
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_067
CoordinatesLat. (o)32.1Long. (o)17.7Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008425Metagenome / Metatranscriptome333Y
F024797Metagenome / Metatranscriptome204Y
F032332Metagenome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0211504_10108362F032332N/AMEKGNGFSDDFIRSLLLNLEHSNFEEFMGLSYHVMMQSPSVVLKRNDTIETKLKAIDGMIKYFEKIEEYEKCTNLQKLKSMLFVIPPNNED
Ga0211504_10108365F008425N/AMPSKDITYKQFIAHMDKGNKVYMKKPRSWQKVWFWWESKKEKWFLNKAFDKREDGRVEPEPSVWITAKQMESHMDHMTRQGYKYHIDE
Ga0211504_10108366F024797N/AMSEFFRTQMGRKLIDGDIPKLVNVLERIAIQLEKKNKLDEKKFILEERIQKLTIKEANKN
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