NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211504_1015880

Scaffold Ga0211504_1015880


Overview

Basic Information
Taxon OID3300020347 Open in IMG/M
Scaffold IDGa0211504_1015880 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2106
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_067
CoordinatesLat. (o)32.1Long. (o)17.7Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005218Metagenome / Metatranscriptome408Y
F085545Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0211504_10158801F085545N/AMVNIDNLVNEWAYRCEKGYPDMGSPSDLRVLKTILKEEGITIPQFQQVIAEQEKSDELTIKDIEDILNQIKDDKAAIKKIYNFISNRPGEKGFFGISDASNVTDRTVDTSNAPQVIFDLLSNSGDLKKYIDFNKPGFGEIGKEGNFLDFFEGKSGISKDTLTKMFNFSGKESGRGVGKGEVAMALLFKDVKMAAAGGGDLNWGGKSLEVKGSSARLGGRDRKFEGFERTALGQLATKYDKSDEQFRTLIPNLADEEGLDKKELLNAVVDFESKAHPKGDAKKYFTENMLDNPIEIRKAFTKNLIRHYSNSKNIDHFIWWNSNNKFGKYISFSPDEADKLVDDGLLRTNNAAVYQLDPSISKP
Ga0211504_10158803F005218N/AMANDNFYGYKRSPKKRAKALDYKGVDMEFESVNPYEFKKGMYCELNKLGAATLRESDEEQREKATETVLKNLKDVPAYYSYMEHYEVTTRNMDRKPSFKTFLKELEGHSMKEIGDKFTEDKMKEIKLKENIRAEVRNKINELLKTK
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Institute for Fundamental Biomedical Research
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