NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211504_1016447

Scaffold Ga0211504_1016447


Overview

Basic Information
Taxon OID3300020347 Open in IMG/M
Scaffold IDGa0211504_1016447 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2056
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_067
CoordinatesLat. (o)32.1Long. (o)17.7Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003058Metagenome / Metatranscriptome510Y
F003647Metagenome / Metatranscriptome475Y
F005817Metagenome / Metatranscriptome389N

Sequences

Protein IDFamilyRBSSequence
Ga0211504_10164471F005817N/AMRSNLLSRLKPEFKQGLENNKLRYPDMTNDIEFLLTQMFYYDDLTVRQVVNIFVFSDIQYLDRKSFNWRYGEDVFEIENGVV
Ga0211504_10164472F003647N/AMAMCEWTLADIKNRASNKAFAKVTILTLDIETYKEDLRTGNIGGVTYEEFEQVLEGYKTELQVWNYITELIEKQ
Ga0211504_10164477F003058GAGMTDKEMSKLAEIIVDKIIERQKAYDDEFKADIQSMVEENTNVEFGTVTQDELIIEEIDGLQERLAQLEEKEDYESARIVANKIKHLKNKYNL
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