NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211504_1017118

Scaffold Ga0211504_1017118


Overview

Basic Information
Taxon OID3300020347 Open in IMG/M
Scaffold IDGa0211504_1017118 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1998
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_067
CoordinatesLat. (o)32.1Long. (o)17.7Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018831Metagenome / Metatranscriptome233Y
F018932Metagenome / Metatranscriptome232Y
F031501Metagenome / Metatranscriptome182N

Sequences

Protein IDFamilyRBSSequence
Ga0211504_10171182F018932N/ALKSNRATRHQEIWKRTENGLELVMPKIINSDIGYQLMFGYREDHRIERDRLEKNAEKYTTAIYESELTKKRF
Ga0211504_10171184F018831N/AMKVVASISVQISVEDTELLDDAKERAIDTLIDNLEDWINNNGIPPIISIEYKLPEFGDNDEDFLN
Ga0211504_10171188F031501GGAMTNTTNTIMTTELLDLFDEAKRIIDKQEELIKMQQSIIKTMQQALQGVELNELLLKKQLADLQEELVTITNDYIDVMGGGEKV
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