NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211504_1021166

Scaffold Ga0211504_1021166


Overview

Basic Information
Taxon OID3300020347 Open in IMG/M
Scaffold IDGa0211504_1021166 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1737
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_067
CoordinatesLat. (o)32.1Long. (o)17.7Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049660Metagenome / Metatranscriptome146Y
F095485Metagenome / Metatranscriptome105Y
F103295Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0211504_10211664F103295N/AMEIDKAKFKRLKKKVLSKYPKASTQRTSDGKYFVSDGVGNELMKEYMIPTQETVTAAWFWLADVMKVNQNIERTHPKRMDLKSFEAKFARISKRNRK
Ga0211504_10211665F049660N/AMKRYSGKPRGTVNQGGATHQKDRDKLKQFGKNYNSIDFELAENLTESNYKDKSRPIGTLVVGNHRVDLTWSECNKIFTTLLDAQQVHRRKIQLGMFD
Ga0211504_10211666F095485N/AMKASDLFRELGMGDDEMSEARNWVSYKHFSETVPDVLTLSEYVDTIYKRAVTVDAKPHQWFSEKYMTERYLQSNIGIDSDYITNLEKRICKILQNGKIYELHIEKFLELCLGVVRDSLLALPKEVLMFLNQIYKGKY
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