NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211504_1025309

Scaffold Ga0211504_1025309


Overview

Basic Information
Taxon OID3300020347 Open in IMG/M
Scaffold IDGa0211504_1025309 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1544
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Saprospiria → Saprospirales → unclassified Saprospirales → Saprospirales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_067
CoordinatesLat. (o)32.1Long. (o)17.7Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019643Metagenome / Metatranscriptome228Y
F052546Metagenome142Y
F065685Metagenome / Metatranscriptome127Y
F090247Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0211504_10253091F090247N/ARSKKKADQWRNDLPKMKIIGQERYITCPEIRRGRGVVTCTKSKNSVNCQLCVQGLANVLFPSH
Ga0211504_10253092F019643AGGAGMAKYYIKSGTLELIFSTELEPYDACRRVIHECNSDDELDEYMYLDERGYRDYTSADTTTFVVDTEQILRKEGYIK
Ga0211504_10253094F065685AGGAGMKPVVGIGSNTKYGRVLKVQHDGVVVENGRGERETVSFRKIESTLKGVKK
Ga0211504_10253096F052546GAGGMIKNYINTAAILILPTILYSGCAIIPNKNVLTMNKTIELDERAIEKLNVGVRLEWI

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