NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211504_1046802

Scaffold Ga0211504_1046802


Overview

Basic Information
Taxon OID3300020347 Open in IMG/M
Scaffold IDGa0211504_1046802 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1042
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_067
CoordinatesLat. (o)32.1Long. (o)17.7Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007723Metagenome / Metatranscriptome346Y
F019682Metagenome / Metatranscriptome228Y
F031507Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0211504_10468021F007723N/AMIKAIKSKMLTYLFKDWVMNETDLETLQVSKQFISKREQAITGHVPIMGFRSHLSQES
Ga0211504_10468023F031507N/AMINTKIKFENKYGQIQEGIVTDDNYQCDWDKDLNGCIRVEVDYGNNIIGTINTLIDKSQI
Ga0211504_10468024F019682N/AMLVVLESVGSVFDTNQGIIYPQNIDGSYDKNFSISVKEEEVASDWWEALSSEDYKIVKNN
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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